Cannot install package libgomp-8.5.0-4.el8_5.x86_64

athensy · November 16, 2021, 5:07am

After upgrade Rocky Linux from 8.4 to 8.5, I get the following error as I try to update my system:

Last metadata expiration check: 0:42:23 ago on Tue 16 Nov 2021 12:41:31 HKT.
Error:
Problem 1: package libstdc+±devel-8.5.0-3.el8.x86_64 requires libstdc++(x86-64) = 8.5.0-3.el8, but none of the providers can be installed

cannot install both libstdc+±8.5.0-4.el8_5.x86_64 and libstdc+±8.5.0-3.el8.x86_64
cannot install the best update candidate for package libstdc+±devel-8.5.0-3.el8.x86_64
cannot install the best update candidate for package libstdc+±8.5.0-3.el8.x86_64
Problem 2: libgomp-8.5.0-3.el8.i686 has inferior architecture
package gcc-8.5.0-3.el8.x86_64 requires libgomp = 8.5.0-3.el8, but none of the providers can be installed
cannot install both libgomp-8.5.0-4.el8_5.x86_64 and libgomp-8.5.0-3.el8.x86_64
cannot install the best update candidate for package libgomp-8.5.0-3.el8.x86_64
cannot install the best update candidate for package gcc-8.5.0-3.el8.x86_64
(try to add ‘–allowerasing’ to command line to replace conflicting packages or ‘–skip-broken’ to skip uninstallable packages or ‘–nobest’ to use not only best candidate packages)

Then I issue command “dnf update --allowerasing --nobest”, I get the follow error:

Problem: cannot install the best update candidate for package gcc-8.5.0-3.el8.x86_64

problem with installed package gcc-8.5.0-3.el8.x86_64
package gcc-8.5.0-3.el8.x86_64 requires libgomp.so.1()(64bit), but none of the providers can be installed
cannot install the best update candidate for package libgomp-8.5.0-3.el8.x86_64
libgomp-8.5.0-3.el8.i686 has inferior architecture
package gcc-8.5.0-3.el8.x86_64 requires libgomp = 8.5.0-3.el8, but none of the providers can be installed
cannot install both libgomp-8.5.0-4.el8_5.x86_64 and libgomp-8.5.0-3.el8.x86_64
==========================================================================================================================================================================================
Package Architecture Version Repository Size
==========================================================================================================================================================================================
Skipping packages with conflicts:
(add ‘–best’ to command line to force their upgrade):
libgomp x86_64 8.5.0-4.el8_5 baseos 205 k

Transaction Summary

Skip 1 Package

Nothing to do.
Complete!

I can’t fix it by trying all suggested options in the error message, please help.

nazunalika · November 16, 2021, 5:37am

Are you excluding packages in your dnf/repo configuration? Are you selectively running updates rather than just running dnf update? If at all possible, please provide rpaste --sysinfo.

linuxlover · November 16, 2021, 5:51am

Dear nazunalika
As per my understandig below two package are missing in appstream which are causing update the issue.

libstdc+±devel-8.5.0-4.el8.x86_64 and gcc-8.5.0-4.el8.x86_64

Their available version are gcc-8.5.0-3.el8.x86_64 and libstdc+±devel-8.5.0-3.el8.x86_64

linuxlover · November 16, 2021, 6:39am

Further more i tested AlmaLinux and did not observe this error. Then tried to compare it with AlmaLinux

and

Alama is not providing libstdc+±8.5.0-4.el8.x86_64 and libgomp-8.5.0-4.el8.x86_64 whose update is causing the issue.

athensy · November 16, 2021, 11:02am

Hi nazunalika,

rpaste --sysinfo details are as follows:

OS Release:

Rocky Linux release 8.5 (Green Obsidian)
NAME=“Rocky Linux”
VERSION=“8.5 (Green Obsidian)”
ID=“rocky”
ID_LIKE=“rhel centos fedora”
VERSION_ID=“8.5”
PLATFORM_ID=“platform:el8”
PRETTY_NAME=“Rocky Linux 8.5 (Green Obsidian)”
ANSI_COLOR=“0;32”
CPE_NAME=“cpe:/o:rocky:rocky:8.5:GA”
HOME_URL=“https://rockylinux.org/”
BUG_REPORT_URL=“https://bugs.rockylinux.org/”
ROCKY_SUPPORT_PRODUCT=“Rocky Linux”
ROCKY_SUPPORT_PRODUCT_VERSION=“8”
Rocky Linux release 8.5 (Green Obsidian)

Desktop Environments

Desktop Installed

SELinux Status

Disabled

SELINUX=disabled
SELINUXTYPE=targeted

SELinux Errors

CPU Info

2 Intel(R) Core™ i7-4790 CPU @ 3.60GHz

64-bit Support

Yes

Virtualization Support

No

Load Average

18:59:28 up 6:34, 1 user, load average: 0.05, 0.11, 0.14

Memory usage

          total        used        free      shared  buff/cache   available

Mem: 3736 829 1896 8 1010 2731
Swap: 3815 0 3815

Top 5 CPU hogs

   0   21013  4.0  0.0 222648  2104 pts/0    S+   18:59   0:00 rpaste
   0   20950  2.6  0.1 237236  5300 pts/0    S    18:58   0:02 bash
  27    1014  1.4  4.0 1758412 156760 ?      Ssl  12:25   5:39 mysqld
   0     935  1.0  0.0 246712  3604 ?        Ss   12:25   4:01 crond
   0    3334  0.1  1.2 880140 48600 ?        Ssl  12:25   0:24 node /www/locat

Top 5 memory hogs

  27    1014  1.4  4.0 1758412 156760 ?      Ssl  12:25   5:39 mysqld
   0    9516  0.0  3.9 1122456 150664 ?      Ssl  13:21   0:07 packagekitd
   0    3331  0.1  1.9 908856 75624 ?        Ssl  12:25   0:36 node /www/locat
   0    3322  0.1  1.9 910912 73564 ?        Ssl  12:25   0:43 node /www/locat
   0    3314  0.1  1.9 910188 73048 ?        Ssl  12:25   0:43 node /www/locat

Disk space usage

Filesystem Type Size Used Avail Use% Mounted on
devtmpfs devtmpfs 1.9G 0 1.9G 0% /dev
tmpfs tmpfs 1.9G 0 1.9G 0% /dev/shm
tmpfs tmpfs 1.9G 8.9M 1.9G 1% /run
tmpfs tmpfs 1.9G 0 1.9G 0% /sys/fs/cgroup
/dev/mapper/rl-root xfs 89G 6.0G 83G 7% /
/dev/loop2 squashfs 43M 43M 0 100% /var/lib/snapd/snap/certbot/1514
/dev/loop3 squashfs 100M 100M 0 100% /var/lib/snapd/snap/core/11993
/dev/loop0 squashfs 43M 43M 0 100% /var/lib/snapd/snap/certbot/1582
/dev/loop5 squashfs 62M 62M 0 100% /var/lib/snapd/snap/core20/1081
/dev/loop4 squashfs 62M 62M 0 100% /var/lib/snapd/snap/core20/1169
/dev/loop1 squashfs 100M 100M 0 100% /var/lib/snapd/snap/core/11798
/dev/sda1 xfs 947M 328M 620M 35% /boot
tmpfs tmpfs 374M 0 374M 0% /run/user/1000

Block Devices

/dev/mapper/rl-root: UUID=“899f321e-1e9a-44fb-b87c-b778edabbdf4” BLOCK_SIZE=“512” TYPE=“xfs”
/dev/sda2: UUID=“oia0VM-J40P-des8-2DWc-3bUx-ujaN-7T0bBo” TYPE=“LVM2_member” PARTUUID=“361954ec-02”
/dev/sda1: UUID=“e0119eff-d01f-4743-ba3c-457cdfc5b2c0” BLOCK_SIZE=“512” TYPE=“xfs” PARTUUID=“361954ec-01”
/dev/mapper/rl-swap: UUID=“bcbeb0f2-cbbb-440d-a2dd-7e2e0ca76d9c” TYPE=“swap”
/dev/loop0: TYPE=“squashfs”
/dev/loop1: TYPE=“squashfs”
/dev/loop2: TYPE=“squashfs”
/dev/loop3: TYPE=“squashfs”
/dev/loop4: TYPE=“squashfs”
/dev/loop5: TYPE=“squashfs”

PCI devices

00:00.0 Host bridge [0600]: Intel Corporation 440FX - 82441FX PMC [Natoma] [8086:1237] (rev 02)
00:01.0 ISA bridge [0601]: Intel Corporation 82371SB PIIX3 ISA [Natoma/Triton II] [8086:7000]
00:01.1 IDE interface [0101]: Intel Corporation 82371AB/EB/MB PIIX4 IDE [8086:7111] (rev 01)
00:02.0 VGA compatible controller [0300]: VMware SVGA II Adapter [15ad:0405]
00:03.0 Ethernet controller [0200]: Intel Corporation 82540EM Gigabit Ethernet Controller [8086:100e] (rev 02)
00:04.0 System peripheral [0880]: InnoTek Systemberatung GmbH VirtualBox Guest Service [80ee:cafe]
00:05.0 Multimedia audio controller [0401]: Intel Corporation 82801AA AC’97 Audio Controller [8086:2415] (rev 01)
00:06.0 USB controller [0c03]: Apple Inc. KeyLargo/Intrepid USB [106b:003f]
00:07.0 Bridge [0680]: Intel Corporation 82371AB/EB/MB PIIX4 ACPI [8086:7113] (rev 08)
00:0b.0 USB controller [0c03]: Intel Corporation 82801FB/FBM/FR/FW/FRW (ICH6 Family) USB2 EHCI Controller [8086:265c]
00:0d.0 SATA controller [0106]: Intel Corporation 82801HM/HEM (ICH8M/ICH8M-E) SATA Controller [AHCI mode] [8086:2829] (rev 02)

USB devices

DRM Information

[drm] FIFO at 0x00000000f1000000 size is 2048 kiB
[drm] VRAM at 0x00000000f0000000 size is 16384 kiB
[drm] DMA map mode: Caching DMA mappings.
[drm] Capabilities:
[drm] Cursor.
[drm] Cursor bypass 2.
[drm] Alpha cursor.
[drm] 3D.
[drm] Extended Fifo.
[drm] Pitchlock.
[drm] Irq mask.
[drm] GMR.
[drm] Traces.
[drm] GMR2.
[drm] Screen Object 2.
[drm] Max GMR ids is 8192
[drm] Max number of GMR pages is 1048576
[drm] Max dedicated hypervisor surface memory is 507904 kiB
[drm] Maximum display memory size is 16384 kiB
[drm] Screen Objects Display Unit initialized
[drm] width 720
[drm] height 400
[drm] bpp 32
[drm] Fifo max 0x00200000 min 0x00001000 cap 0x00000311
[drm] Atomic: yes.
[drm:vmw_host_log [vmwgfx]] ERROR Failed to send host log message.
[drm:vmw_host_log [vmwgfx]] ERROR Failed to send host log message.
fbcon: svgadrmfb (fb0) is primary device
[drm] Initialized vmwgfx 2.18.0 20200114 for 0000:00:02.0 on minor 0

Xorg modules

GL Support

Xorg errors

Kernel Buffer Tail

[ 8.637672] loop4: detected capacity change from 0 to 64835584
[ 8.709227] squashfs: version 4.0 (2009/01/31) Phillip Lougher
[ 9.042246] snd_intel8x0 0000:00:05.0: allow list rate for 1028:0177 is 48000
[ 9.044675] loop5: detected capacity change from 0 to 64770048
[ 9.110976] XFS (sda1): Ending clean mount
[ 16.823793] IPv6: ADDRCONF(NETDEV_UP): enp0s3: link is not ready
[ 16.825733] IPv6: ADDRCONF(NETDEV_UP): enp0s3: link is not ready
[ 16.827110] e1000: enp0s3 NIC Link is Up 1000 Mbps Full Duplex, Flow Control: RX
[ 16.827744] IPv6: ADDRCONF(NETDEV_CHANGE): enp0s3: link becomes ready
[12851.724150] loop6: detected capacity change from 0 to 4096

Last few reboots

runlevel (to lvl 3) 4.18.0-348.el8.0 Tue Nov 16 12:25 still running
reboot system boot 4.18.0-348.el8.0 Tue Nov 16 12:24 still running
runlevel (to lvl 3) 4.18.0-305.25.1. Fri Nov 12 17:33 - 12:24 (3+18:51)
reboot system boot 4.18.0-305.25.1. Fri Nov 12 17:33 - 12:24 (3+18:51)
runlevel (to lvl 3) 4.18.0-305.25.1. Fri Nov 12 08:35 - 17:17 (08:41)
reboot system boot 4.18.0-305.25.1. Fri Nov 12 08:35 - 17:17 (08:42)
runlevel (to lvl 3) 4.18.0-305.25.1. Mon Nov 8 21:56 - 08:33 (3+10:36)
reboot system boot 4.18.0-305.25.1. Mon Nov 8 21:56 - 08:33 (3+10:36)
runlevel (to lvl 3) 4.18.0-305.19.1. Tue Oct 19 01:03 - 21:56 (20+20:52)
reboot system boot 4.18.0-305.19.1. Tue Oct 19 01:03 - 21:56 (20+20:52)

wtmp begins Wed Jun 23 22:32:12 2021

DNF Repos

repo id repo name
appstream Rocky Linux 8 - AppStream
baseos Rocky Linux 8 - BaseOS
epel Extra Packages for Enterprise Linux 8 - x86_64
epel-modular Extra Packages for Enterprise Linux Modular 8 - x86_64
extras Rocky Linux 8 - Extras
total 72
-rw-r–r-- 1 root root 1485 Sep 5 01:28 epel-modular.repo
-rw-r–r-- 1 root root 1564 Sep 5 01:28 epel-playground.repo
-rw-r–r-- 1 root root 1422 Sep 5 01:28 epel.repo
-rw-r–r-- 1 root root 1584 Sep 5 01:28 epel-testing-modular.repo
-rw-r–r-- 1 root root 1521 Sep 5 01:28 epel-testing.repo
-rw-r–r–. 1 root root 700 Oct 9 07:29 Rocky-AppStream.repo
-rw-r–r–. 1 root root 685 Oct 9 07:29 Rocky-BaseOS.repo
-rw-r–r-- 1 root root 1753 Oct 9 07:29 Rocky-Debuginfo.repo
-rw-r–r–. 1 root root 350 Oct 9 07:29 Rocky-Devel.repo
-rw-r–r–. 1 root root 685 Oct 9 07:29 Rocky-Extras.repo
-rw-r–r–. 1 root root 721 Oct 9 07:29 Rocky-HighAvailability.repo
-rw-r–r–. 1 root root 680 Oct 9 07:29 Rocky-Media.repo
-rw-r–r-- 1 root root 670 Oct 9 07:29 Rocky-NFV.repo
-rw-r–r-- 1 root root 680 Oct 9 07:29 Rocky-Plus.repo
-rw-r–r–. 1 root root 705 Oct 9 07:29 Rocky-PowerTools.repo
-rw-r–r–. 1 root root 736 Oct 9 07:29 Rocky-ResilientStorage.repo
-rw-r–r–. 1 root root 671 Oct 9 07:29 Rocky-RT.repo
-rw-r–r–. 1 root root 2335 Oct 9 07:29 Rocky-Sources.repo
[main]
gpgcheck=1
installonly_limit=3
clean_requirements_on_remove=True
best=True
skip_if_unavailable=False

Last 20 packages

rpaste-0.1-3.el8.2.noarch Tuesday, November 16, 2021 PM06:59:23 HKT
vim-filesystem-8.0.1763-16.el8.noarch Tuesday, November 16, 2021 PM12:16:27 HKT
qt5-srpm-macros-5.15.2-1.el8.0.1.noarch Tuesday, November 16, 2021 PM12:16:27 HKT
NetworkManager-config-server-1.32.10-4.el8.noarch Tuesday, November 16, 2021 PM12:16:27 HKT
alsa-sof-firmware-1.8-1.el8.noarch Tuesday, November 16, 2021 PM12:16:27 HKT
iwl100-firmware-39.31.5.1-103.el8.1.noarch Tuesday, November 16, 2021 PM12:16:26 HKT
iwl1000-firmware-39.31.5.1-103.el8.1.noarch Tuesday, November 16, 2021 PM12:16:26 HKT
iwl6000g2a-firmware-18.168.6.1-103.el8.1.noarch Tuesday, November 16, 2021 PM12:16:25 HKT
iwl6000-firmware-9.221.4.1-103.el8.1.noarch Tuesday, November 16, 2021 PM12:16:25 HKT
iwl5150-firmware-8.24.2.2-103.el8.1.noarch Tuesday, November 16, 2021 PM12:16:25 HKT
iwl5000-firmware-8.83.5.1_1-103.el8.1.noarch Tuesday, November 16, 2021 PM12:16:25 HKT
iwl3160-firmware-25.30.13.0-103.el8.1.noarch Tuesday, November 16, 2021 PM12:16:25 HKT
iwl2030-firmware-18.168.6.1-103.el8.1.noarch Tuesday, November 16, 2021 PM12:16:25 HKT
iwl2000-firmware-18.168.6.1-103.el8.1.noarch Tuesday, November 16, 2021 PM12:16:25 HKT
iwl135-firmware-18.168.6.1-103.el8.1.noarch Tuesday, November 16, 2021 PM12:16:25 HKT
iwl105-firmware-18.168.6.1-103.el8.1.noarch Tuesday, November 16, 2021 PM12:16:25 HKT
iwl7260-firmware-25.30.13.0-103.el8.1.noarch Tuesday, November 16, 2021 PM12:16:24 HKT
iwl6050-firmware-41.28.5.1-103.el8.1.noarch Tuesday, November 16, 2021 PM12:16:24 HKT
iwl6000g2b-firmware-18.168.6.1-103.el8.1.noarch Tuesday, November 16, 2021 PM12:16:24 HKT
vim-minimal-8.0.1763-16.el8.x86_64 Tuesday, November 16, 2021 PM12:16:21 HKT

EFI Support

athensy · November 16, 2021, 11:06am

Hi linuxlover,

Then you mean these packages missing in Rocky Linux cause this problem? If it is the case, do you mean it will be fixed automatically once these two packages are available?

iwalker · November 16, 2021, 11:10am

Similar as here, I think package name is problem here: Rocky Linux 8.4 to Rocky Linux 8.5 update issues - #4 by iwalker it should be el8 and not el8_5.

kthomsen · November 16, 2021, 11:27am

We’ve observed that mirrors.rockylinux.org currently serves mirrorlists for “AppStream” where each URL points to the “kickstart” tree instead of the “os” tree. For example:

$ curl 'https://mirrors.rockylinux.org/mirrorlist?arch=x86_64&repo=AppStream-8' 2>/dev/null | head -n 5
# repo = rocky-AppStream-8.5 arch = x86_64 country = global 
http://la.mirrors.clouvider.net/rocky/8.5/AppStream/x86_64/kickstart/
http://dl.rockylinux.org/pub/rocky/8.5/AppStream/x86_64/kickstart/
http://mirror.i3d.net/pub/rockylinux//8.5/AppStream/x86_64/kickstart/
https://mirror.yandex.ru/rockylinux/8.5/AppStream/x86_64/kickstart/

The problem w.r.t. the missing libstdc++-devel-8.5.0-4.el8_5 update package most likely stems from this.

Martin · November 16, 2021, 1:14pm

This should help.

nazunalika · November 16, 2021, 3:06pm

In majority of cases, I would never suggest allowerasigin or nobest - Our mirror manager for some reason decided it wanted to choose the kickstart directory rather than os, which is where all the updated packages live. BaseOS seems fine, but it seems the other core repositories aren’t, we’ll look into it and updates should be able to go through.