Something really got messed up on our server all because an update could not download from a repo. It was suggested that we vi /etc/yum.repos.d/rocky-extras.repo and comment out all the mirrorlist and uncomment the base* urls then run a few commands. But this seemed to have cause more issues than fixes. We are worried we will loose the ability to use SSH DNF etc. This was where the problem started.
2026-04-15T04:15:49-0700 DEBUG error: Curl error (28): Timeout was reached for http://ftp.yz.yamagata-u.ac.jp/pub/Linux/rocky-linux/9.7/BaseOS/x86_64/os/repodata/repomd.xml [Failed to connect to ftp.yz.yamagata-u.ac.jp port 80: Connection timed out] (http://ftp.yz.yamagata-u.ac.jp/pub/Linux/rocky-linux/9.7/BaseOS/x86_64/os/repodata/repomd.xml).
2026-04-15T04:15:49-0700 WARNING Errors during downloading metadata for repository ‘baseos’:
- Curl error (28): Timeout was reached for http://ftp.yz.yamagata-u.ac.jp/pub/Linux/rocky-linux/9.7/BaseOS/x86_64/os/repodata/repomd.xml [Failed to connect to ftp.yz.yamagata-u.ac.jp port 80: Connection timed out]
2026-04-15T04:15:49-0700 DDEBUG Cleaning up.
2026-04-15T04:15:49-0700 DDEBUG Plugins were unloaded.
2026-04-15T04:15:49-0700 SUBDEBUG
Traceback (most recent call last):
File “/usr/lib/python3.9/site-packages/dnf/repo.py”, line 574, in load
ret = self._repo.load()
File “/usr/lib64/python3.9/site-packages/libdnf/repo.py”, line 331, in load
return _repo.Repo_load(self)
libdnf._error.Error: Failed to download metadata for repo ‘baseos’: Cannot download repomd.xml: Curl error (28): Timeout was reached for http://ftp.yz.yamagata-u.ac.jp/pub/Linux/rocky-linux/9.7/BaseOS/x86_64/os/repodata/repomd.xml [Failed to connect to ftp.yz.yamagata-u.ac.jp port 80: Connection timed out]
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File “/usr/lib/python3.9/site-packages/dnf/cli/main.py”, line 67, in main
return _main(base, args, cli_class, option_parser_class)
File “/usr/lib/python3.9/site-packages/dnf/cli/main.py”, line 106, in _main
return cli_run(cli, base)
File “/usr/lib/python3.9/site-packages/dnf/cli/main.py”, line 122, in cli_run
cli.run()
File “/usr/lib/python3.9/site-packages/dnf/cli/cli.py”, line 1130, in run
return self.command.run()
File “/usr/lib/python3.9/site-packages/dnf/cli/commands/makecache.py”, line 50, in run
return self.base.update_cache(timer)
File “/usr/lib/python3.9/site-packages/dnf/base.py”, line 384, in update_cache
self.fill_sack(load_system_repo=False, load_available_repos=True) # performs the md sync
File “/usr/lib/python3.9/site-packages/dnf/base.py”, line 413, in fill_sack
self._add_repo_to_sack(r)
File “/usr/lib/python3.9/site-packages/dnf/base.py”, line 142, in _add_repo_to_sack
repo.load()
File “/usr/lib/python3.9/site-packages/dnf/repo.py”, line 581, in load
raise dnf.exceptions.RepoError(str(e))
dnf.exceptions.RepoError: Failed to download metadata for repo ‘baseos’: Cannot download repomd.xml: Curl error (28): Timeout was reached for http://ftp.yz.yamagata-u.ac.jp/pub/Linux/rocky-linux/9.7/BaseOS/x86_64/os/repodata/repomd.xml [Failed to connect to ftp.yz.yamagata-u.ac.jp port 80: Connection timed out]
2026-04-15T04:15:49-0700 CRITICAL Error: Failed to download metadata for repo ‘baseos’: Cannot download repomd.xml: Curl error (28): Timeout was reached for http://ftp.yz.yamagata-u.ac.jp/pub/Linux/rocky-linux/9.7/BaseOS/x86_64/os/repodata/repomd.xml [Failed to connect to ftp.yz.yamagata-u.ac.jp port 80: Connection timed out]
Now we have this error;
2026-04-16T12:07:41-0700 CRITICAL Error:
Problem: package mod_ssl-1:2.4.65-1.module_codeit.codeit.el9.x86_64 from @System requires libcrypto.so.81.3()(64bit), but none of the providers can be installed
- package mod_ssl-1:2.4.65-1.module_codeit.codeit.el9.x86_64 from @System requires libcrypto.so.81.3(OPENSSL_3.0.0)(64bit), but none of the providers can be installed
- package mod_ssl-1:2.4.65-1.module_codeit.codeit.el9.x86_64 from @System requires libssl.so.81.3()(64bit), but none of the providers can be installed
- package mod_ssl-1:2.4.65-1.module_codeit.codeit.el9.x86_64 from @System requires libssl.so.81.3(OPENSSL_3.0.0)(64bit), but none of the providers can be installed
- cannot install both openssl-quic-libs-1:4.0.0-1.codeit.el9.x86_64 from CodeIT and openssl-quic-libs-1:3.5.6-1.codeit.el9.x86_64 from @System
- cannot install both openssl-quic-libs-1:4.0.0-1.codeit.el9.x86_64 from CodeIT and openssl-quic-libs-3.0.10-1.codeit.el9.x86_64 from CodeIT
- cannot install both openssl-quic-libs-1:4.0.0-1.codeit.el9.x86_64 from CodeIT and openssl-quic-libs-3.0.11-1.codeit.el9.x86_64 from CodeIT
- cannot install both openssl-quic-libs-1:4.0.0-1.codeit.el9.x86_64 from CodeIT and openssl-quic-libs-3.0.12-1.codeit.el9.x86_64 from CodeIT
- cannot install both openssl-quic-libs-1:4.0.0-1.codeit.el9.x86_64 from CodeIT and openssl-quic-libs-3.0.13-1.codeit.el9.x86_64 from CodeIT
- cannot install both openssl-quic-libs-1:4.0.0-1.codeit.el9.x86_64 from CodeIT and openssl-quic-libs-3.0.14-1.codeit.el9.x86_64 from CodeIT
- cannot install both openssl-quic-libs-1:4.0.0-1.codeit.el9.x86_64 from CodeIT and openssl-quic-libs-3.0.15-1.codeit.el9.x86_64 from CodeIT
- cannot install both openssl-quic-libs-1:4.0.0-1.codeit.el9.x86_64 from CodeIT and openssl-quic-libs-3.0.16-1.codeit.el9.x86_64 from CodeIT
- cannot install both openssl-quic-libs-1:4.0.0-1.codeit.el9.x86_64 from CodeIT and openssl-quic-libs-3.0.8-1.codeit.el9.x86_64 from CodeIT
- cannot install both openssl-quic-libs-1:4.0.0-1.codeit.el9.x86_64 from CodeIT and openssl-quic-libs-3.0.9-1.codeit.el9.x86_64 from CodeIT
- cannot install both openssl-quic-libs-1:4.0.0-1.codeit.el9.x86_64 from CodeIT and openssl-quic-libs-1:3.5.0-2.codeit.el9.x86_64 from CodeIT
- cannot install both openssl-quic-libs-1:4.0.0-1.codeit.el9.x86_64 from CodeIT and openssl-quic-libs-1:3.5.1-1.codeit.el9.x86_64 from CodeIT
- cannot install both openssl-quic-libs-1:4.0.0-1.codeit.el9.x86_64 from CodeIT and openssl-quic-libs-1:3.5.4-1.codeit.el9.x86_64 from CodeIT
- cannot install both openssl-quic-libs-1:4.0.0-1.codeit.el9.x86_64 from CodeIT and openssl-quic-libs-1:3.5.5-1.codeit.el9.x86_64 from CodeIT
- cannot install both openssl-quic-libs-1:4.0.0-1.codeit.el9.x86_64 from CodeIT and openssl-quic-libs-1:3.5.6-1.codeit.el9.x86_64 from CodeIT
- cannot install the best update candidate for package openssl-quic-libs-1:3.5.6-1.codeit.el9.x86_64
- problem with installed package mod_ssl-1:2.4.65-1.module_codeit.codeit.el9.x86_64
2026-04-16T12:07:41-0700 INFO (try to add ‘–allowerasing’ to command line to replace conflicting packages or ‘–skip-broken’ to skip uninstallable packages or ‘–nobest’ to use not only best candidate packages)
Thanks